PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0039s0042.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 523aa    MW: 55107.5 Da    PI: 6.9026
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0039s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.2e-1094119227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +++ C +++rtG C +G +C+F+H+p
  Sphfalx0039s0042.1.p  94 GEPDCVYYMRTGLCGFGQTCRFNHPP 119
                           5799********************97 PP

2zf-CCCH36.21e-11139164227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C+++++tGtCk+G++Ck++H++
  Sphfalx0039s0042.1.p 139 GQPECQYYLKTGTCKFGATCKYHHPR 164
                           789*********************96 PP

3zf-CCCH38.91.4e-12186210327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           +++C +++rtG CkyG +CkF+H++
  Sphfalx0039s0042.1.p 186 EKECAYYMRTGSCKYGVTCKFHHPQ 210
                           579********************97 PP

4zf-CCCH35.81.3e-11348374127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C+++++tG Ck+G +C+++H++
  Sphfalx0039s0042.1.p 348 PGQPECQYYMKTGDCKFGITCRYHHPK 374
                           5789*********************96 PP

5zf-CCCH26.98.3e-09396419326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                            ++C f+  +G+Ck+G++CkF H+
  Sphfalx0039s0042.1.p 396 APPCTFYTHYGICKFGPTCKFDHP 419
                           689********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.0E-592119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.85992120IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-795119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-597120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.732137165IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6137164IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9138164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6140166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4143165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.033183211IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6183211IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5185210IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10186210IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-5189209IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5347374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774347375IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8349374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5351375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.662393421IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5393420IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-6396419IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-5397421IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MEYYAPAKGA PSSFVGLEGG SVSDSTGVPA VLGSIPYDDW HVKHGVPSPG STAADTGVEG  60
LSEAVWQMTI QSQEGSGMDA VAGGQPGQFP ERLGEPDCVY YMRTGLCGFG QTCRFNHPPN  120
RKLATAIAQG KGDYPERFGQ PECQYYLKTG TCKFGATCKY HHPRDQAGST GRVQLNVVGL  180
PLRTDEKECA YYMRTGSCKY GVTCKFHHPQ PTTFLSPVYS TTGAPTSPAP QLYPQGVPSW  240
PIARAPYLHP RLQGPSSYSP VVLPPHQGVV SVPGWNTYQG PVGPISLSEA QQHPVGTSYV  300
YGALQQPDSG SGHGTYAPYL HGSSAMGLPA TQPHNINGQR DTIFPERPGQ PECQYYMKTG  360
DCKFGITCRY HHPKDRAIPS PTCVLSPIGL PLRPGAPPCT FYTHYGICKF GPTCKFDHPL  420
GGLTYSPSAS SLADMPVAPY PTGFSPTAVG ASSSIEAPHD GPYGASSSNE PAAPSEELPG  480
LQQLRNGTDP PAVGASAGAT TTQDLSTQVT IPGTGSGEHS QA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218439.11e-166PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF91e-149ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLM5VZ661e-165M5VZ66_PRUPE; Uncharacterized protein
STRINGPP1S102_155V6.11e-163(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-129zinc finger protein 1